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(current)
Bioinformatics (2024)
Instructor: Dr. Chenhong Li
Office: A209 College of Fisheries and Life Science
Phone: 15692161233
E-mail: chli@shou.edu.cn
Syllabus
Lectures
lesson1.1_Intro.pptx
lesson1.2_SeqAlignment_dotplot.pptx
lesson1.3_DP_LCS.pptx
lesson2.1_Global_Local_Alignment.pptx
lesson2.2_BLAST.pptx
lesson2.3_MSA.pptx
lesson3.1_Phylogenetics_intro.pptx
lesson3.2_Phylogenetic_methods.pptx
lesson4.1_Evolutionary_models.pptx
lesson4.2_Model_selection.pptx
lesson5.1_Bayesian_analysis2.pptx
lesson5.2_Bootstrap.pptx
lesson6.1_Systematic_errors.pptx
lesson6.2_Phylogenomics.pptx
lesson6.3_Phylogenetic_tools.pptx
lesson7.1_Pattern_matching.pptx
lesson7.2_Hidden_Markov_model.pptx
lesson7.3_Profile_HMM.pptx
lesson8.1_NGS_platforms.pptx
lesson8.2_NGS_de_novo.pptx
lesson8.3_NGS_mapping.pptx
lesson9.1_Artificial_neural_networks.pptx
lesson9.2_CNN.pptx
lesson9.3_AI_applications.pptx
Homework
bioinfo_hw1.docx
bioinfo_hw2.docx
bioinfo_hw3.docx
Readings
Altschul2013NatureBiotech_success.pdf
Compeau2011NatureBiotech_deBruijn.pdf
Do2008NatureBiotech_EMA.pdf
Eddy2004NatureBiotech_Bayesian.pdf
Eddy2004NatureBiotech_DP.pdf
Eddy2004NatureBiotech_HMM.pdf
Halperin2009NatureBiotech_GWAS.pdf
Halperin2009NatureBiotech_SNPs.pdf
Kingsford2008NatureBiotech_decisiontree.pdf
Krogh2008NatureBiotech_ANN.pdf
Loman2013NatureBiotech_advice.pdf
Marcotte2007NatureBiotech_proteins.pdf
NatureBiotech2006_SVMs.pdf
Ringner2008NatureBiotech_PCA.pdf
Trapnell2009NatureBiotech_mapping.pdf
Vedio
1.Bioinformatics_Introduction
2.Bioinformatics_BLAST
3.Bioinformatics_Regular_Expression_more_BLAST
4.Bioinformatics_HMM
5.Bioinformatics_Phylogenetics_Basic_Concepts
6.Bioinformatics_Phylogenetic_Inference
7.Bioinformatics_Parsimony
8.Bioinformatics_Maximum_Likelihood
9.Bioinformatics_Maximum_Likelihood_II
10.Bioinformatics_Bayesian_Analysis
11.Bioinformatics_Phylogenetics_Bootstrap_Analysis
12.Bioinformatics_Phylogenetics_Systematic_Errors