Publications


2026

Xiu-Ru Xiao, Yi-Ni Zhang, Hai-Feng Xu,et al. Phylogenomics of Tanypodinae (Diptera: Chironomidae) redefines relationships in Procladiini and Tanypodini and supports a new tribe[J]. Molecular phylogenetics and evolution,2026,Vol.224: 108693.

Lixian Wu,Jiantao Hu,Shanshuo Zhang,et al. High-quality genome assembly and annotation of the white cheeked goby, Rhinogobius duospilus (Herre, 1935) (Gobiiformes: Oxudercidae)[J]. G3: Genes|Genomes|Genetics,2026,Vol.16(2): jkaf278.

Wang, Hui,Li,et al. qPCR validation and field application of a rapid RPA-LFD assay for monitoring the invasive alligator gar (Atractosteus spatula)[J]. NeoBiota,2026,(107): 1-20.

Yangkai Shao,Jiantao Hu,Yiling Pan & …Chenhong Li . New record of the eightbarbel loach, Lefua costata (Kessler 1876) in Zhejiang, China, with comments on Lefua sayu (Herre and Lin 1936)[J]. Ichthyological Research,2026,: 1-10.

Hui Wang, Zijun Wu, Yanping Zhang,et al. Distribution of Aquatic Vertebrates in the Winter Dry Season Informing Water Resource Management in a Large Floodplain Lake[J]. Biology,2026,Vol.15(8): 611.

Li-Na DuCA1,Zhuo-Cong Wang,Zhuo-Ni Chen,et al. Near telomere-to-telomere genome assembly of the stone loach (Traccatichthys pulcher)[J]. Scientific Data,2026,Vol.13(1): 492.

Yan Mai, Chenhong Li. PhyloRef: A Semi-Automated Workflow for eDNA Reference Database Curation via Phylogenetic Anomaly Detection[J]. Ecology and evolution,2026,Vol.16(3): e73159.

Suhan Liu1,Qinwen Xue2,Yun Hu3,et al. Phylogenomics of Rhinogobius gobies reveal northern-southern divergence and trait evolution in China[J]. Molecular Phylogenetics and Evolution,2026,Vol.218: 108577.

Mohsan Raza,Arif Muhammad Khan & Chenhong Li . Population genomic assessment of the endangered endemic catfish Glyptothorax stocki reveals distinct lineages in Pakistan[J]. Hydrobiologia,.

Shoujie Tang,Zhiyi Yan,Ying Xing,et al. Chromosome-level genome of Coptodon zillii reveals adaptive evolution and invasion mechanisms[J]. Water Biology and Security,2026,: 100695.

Vanthu Giap, Tianqin Wu, Liang Lu,et al. Chromosome-level genome assembly of Trichiurus japonicus resolves species boundaries and evolutionary history of cutlassfishes in Northwest Pacific[J]. BMC genomics,2026,Vol.27(1).

Mohsan Raza,Sumaira Aziz,Arif Muhammad Khan,et al. DNA barcoding and mitochondrial diversity of threatened sharks and rays from the northern Arabian Sea[J]. Marine Biodiversity,2026,Vol.56(5).

2025

Tianqin Wu, Jiantao Hu, Vanthu Giap,et al. A chromosome-level genome assembly of the Chinese herring (Ilisha elongata) uncovered its population dynamics and genes related to lipid metabolism[J]. The Journal of heredity,2025,Vol.116(6): esaf028.

Qian Wang, Jiantao Hu, Tianqin Wu,et al. Population Patterns and Dynamics of Ilisha elongata (Clupeiformes: Pristigasteridae) Revealed by Target Enrichment Data[J]. Evolutionary applications,2025,Vol.18(8): e70142.

Juan Tan,Yili Qi,Qing Wang,et al. Unveiling the potential of eDNA/eRNA approaches for monitoring the critically endangered Yangtze finless porpoise[J]. Global Ecology and Conservation,2025,Vol.61: e03645.

Jash Hang Limbu,Dipak Rajbanshi,Jiantao Hu,et al. Resolving taxonomic uncertainties in ailiid catfishes (Siluriformes: Ailiidae) using Genome-Scale data[J]. Molecular Phylogenetics and Evolution,2025,Vol.210: 108384.

Minyao Fang (Writing - original draft Investigation Validation Visualization),Yili Qi (Investigation Validation),Hui Wang (Data curation Software)1,et al. Multi-locus environmental DNA markers and taxon-specific primers enhanced detection rate of invasive tilapia[J]. NeoBiota,2025,Vol.101: 185-202.

Chang Chu, Lianwen Zhao, Lele Chen,et al. Stochastic Processes Drive the Assembly of Planktonic Ciliates in A Trellised River Network[J]. The Journal of eukaryotic microbiology,2025,Vol.72(3): e70016.

2024

Limbu, Jash Hang, Rajbanshi, Dipak, Khanal, Laxman, Hui, Wang, Adhikari, Ram Chandra, Thapa, Sunita, Yang, Jin Quan, Li, Chenhong, DNA Barcoding of Catfishes (Order: Siluriformes) with New Records of Two Species from Eastern Nepal, Journal of Applied Ichthyology, 2024, 4907672, 11 pages, 2024. https://doi.org/10.1155/2024/4907672

Wang, F., Wei, M., He, Y., & Li, C. (2024). Microdous hanlini (Gobiiformes: Odontobutidae), a new species of the fine-toothed sleepers from Guangxi, China. Zootaxa. Vol. 5477 No. 3: 9 Jul. 2024.

Limbu JH, Rajbanshi D, Subba A, Khanal L, Yang JQ, Li C (2024) First record of the non-native vermiculated sailfin catfish Pterygoplichthys disjunctivus (Weber 1991) from Lohandra River, Eastern Nepal. BioInvasions Records 13(2): 557–564, https://doi.org/10. 3391/bir.2024.13.2.20

Ling L, Liang L, Wang H, Lin X, Li C. Real-Time Monitoring on the Chinese Giant Salamander Using RPA-LFD. International Journal of Molecular Sciences. 2024; 25(9):4946. https://doi.org/10.3390/ijms25094946

黄汝怡,杨典成,吴军,朱滨清,黄松,李晨虹.浙江丽水发现德化脊蛇[J/OL].动物学杂志,1-10[2024-09-11]. https://doi.org/10.13859/j.cjz.202423202.

Giap V, Rahman MR, Li C (2024). Confirmation of hilsa shad (Tenualosa ilisha) in Vietnamese waters: a morphological and genetic analysis. Journal of the Marine Biological Association of the United Kingdom 104, e42, 1–6. https://doi.org/10.1017/ S0025315424000341

Zhou M, Xia J, Li C. Divergence of the freshwater sleeper, Neodontobutis hainanensis (Chen, 1985) (Teleostei, Odontobutidae), in the Pearl River basin and on Hainan Island of southern China. Zookeys. 2024 Apr 17;1197:183-196. doi: 10.3897/zookeys.1197.110314. PMID: 38725537; PMCID: PMC11079591.

2023

Limbu, J.H., Rajbanshi, D., Subba, B.R., Subba, A., Yang, J., & Li, C. (2023). First Record of Catfish Amblyceps waikhomi (Darshan, Kachari, Dutta, Ganguly, and Das 2016) (Siluriformes: Amblycipitidae) for Nepal from the Singhiya River of Morang District, Eastern Nepal. International Journal of Zoology.

Gu, S., Deng, Y., Wang, P., Li, C., Shi, D., & Wang, S. (2023). Assessing riverine fish community diversity and stability by eDNA metabarcoding. Ecological Indicators.

Hu J, Li H, Sakai H, Mukai T, Young Suk H, Li C. Molecular phylogenetics of the fresh water sleepers Odontobutis (Gobiiformes: Odontobutidae) and its implications on biogeography of freshwater ichthyofauna of East Asia. Mol Phylogenet Evol. 2023 Sep;186:107871. doi: 10.1016/j.ympev.2023.107871.

Li, C. and Jiang, J. (2023), High-throughput genotyping in estimating genetic resources and detecting pathogens in aquaculture. J World Aquac Soc, 54: 558-565. https://doi.org/10.1111/jwas.12996

Lu L, Jiang J, Zhao J, Li C. Comparative genomics revealed drastic gene difference in two small Chinese perches, Siniperca undulata and S. obscura. G3 (Bethesda). 2023 Jul 5;13(7):jkad101. doi: 10.1093/g3journal/jkad101.

Galbreath KE, Makarikov AA, Bell KC, Greiman SE, Allen JM, Haas GMS, Li C, Cook JA, Hoberg EP. Late Cenozoic history and the role of Beringia in assembling a Holarctic cestode species complex. Mol Phylogenet Evol. 2023 Jun;183:107775. doi: 10.1016/j.ympev.2023.107775.

Jiang L, Zhou M, Sarker KK, Huang J, Chen W, Li C. Mitochondrial Genome Uncovered Hidden Genetic Diversity in Microdous chalmersi (Teleostei: Odontobutidae). Fishes. 2023; 8(5):228. https://doi.org/10.3390/fishes8050228

Hu J, Lan C, Li C. Microdous amblyrhynchos sp. nov., a new member of the small-toothed sleepers (Teleostei, Gobiiformes, Odontobutidae) from Guangxi, southern China. Zookeys. 2023 Mar 10;1153:1-13. doi: 10.3897/zookeys.1153.97139.

李晨虹,凌岚馨,谭娟,林晓龙,王辉,孙冰皎,李曌.环境DNA技术在水生生物监测中的挑战、突破和发展前景[J].上海海洋大学学报,2023,32(3):564-574.

Zhou, T., Lu, L., & Li, C. (2023). Optimization of the “in-silico” mate-pair method improves contiguity and accuracy of genome assembly. Ecology and Evolution, 13, e9745. https://doi.org/10.1002/ece3.9745

2022

Zhou, T., Huang, J., Dillman, C.B. et al. Development of Single Nucleotide Polymorphism Markers for the Autotetraploid Scaphirhynchus Sturgeons (Acipenseriformes). J. Ichthyol. 62, 1419–1429 (2022). https://doi.org/10.1134/S0032945222060340

凌岚馨,范共,胡云,黄俊满,李晨虹.环境DNA技术与传统捕捞揭示崇明岛内河鱼类多样性[J].上海海洋大学学报,2022,31(6):1434-1444.

Li Wang, Liang Lu, Kishor Kumar Sarker, Chenhong Li, A high-quality genome assembly of the Laotian shad (Tenualosa thibaudeaui), an endemic species of the Mekong River Basin, Journal of Heredity, 2022;, esac058, https://doi.org/10.1093/jhered/esac058

Wang, J., Chen, X., Hou, X., Wang, J., Yue, W., Huang, S., Xu, G., Yan, J., Lu, G., Hofreiter, M., Li, C., Wang, C., “Omics” data unveil early molecular response underlying limb regeneration in the Chinese mitten crab, Eriocheir sinensis. Science Advances 8, eabl4642. 2022

Q Wang, L P Dizajc, J Huang, K K Sarker, C Kevrekidise, B Reichenbachere, H R Esmaeilic, N Straube, T Moritzh, C Li. Molecular phylogenetics of the Clupeiformes based on exon capture data and a new classification of the order. Molecular Phylogenetic and Evolution, Volume 175, 107590, https://doi.org/10.1016/j.ympev.2022.107590. (2022).

T. Zhou, J. Huang, C. B. Dillman, Y. He, C. Li. Development of SNP markers for the autotetraploid Scaphirhynchus sturgeons (Acipenseriformes). Journal of Ichthyology, accepted (2022).

H Huang, J Jiang, F Cheng, K K Sarker, J Kim, C. Li. Range-wide population genetics of the tapertail anchovy Coilia nasus based on exon-capture data. Marine Biodiversity, accepted (2022).

M Zhou, A He, F Wang, Y Li, C Li. Neodontobutis lani, a new sleeper fish of the family Odontobutidae (Teleostei: Gobiiformes) from Guangxi, southern China. Zootaxa, accepted (2022).

Hu, Y., Li, H., Xia, J., Li, C., 2022. Population structure, genetic diversity, and conservation strategies of a commercially important sleeper fish, Odontobutis potamophilus (Gobiiformes: Odontobutidae) based on gene-capture data. Frontiers in Genetics 13.

Li, C. Conservation of genetic resources for sustainable aquaculture. J World Aquac Soc, 53: 4-7 (2022). https://doi.org/10.1111/jwas.12875

Huang, J., Li, C. A modified protocol with less clean-up steps increased efficiency and product yield of sequencing library preparation. 3 Biotech 12, 111 (2022). https://doi.org/10.1007/s13205-022-03168-5

Fan, G.; Yin, G.; Sarker, A.; Li, C. Diversifying of Two Pampus Species across the Indo–Pacific Barrier and the Origin of the Genus. Diversity 2022, 14, 180. https://doi.org/10.3390/d14030180

Sarker, K.K., Lu, L., Huang, J., Zhou, T., Wang, L., Hu, Y., Jiang, J., Naher, H., Baki, M.A., Sarker, A., Li, C. First report of de novo assembly and annotation from brain and blood transcriptome of an anadromous shad, Alosa sapidissima. BMC Genom Data 23, 22 (2022). https://doi.org/10.1186/s12863-022-01043-z
2021

Yun Hu, Liang Lu, Tao Zhou, Kishor Kumar Sarker, Junman Huang, Jianhong Xia, Chenhong Li, A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895), G3 Genes|Genomes|Genetics, 2021;, jkab395, https://doi.org/10.1093/g3journal/jkab395

C Li. Exon capture - principle and applications to phylogenomics and population genomics of fishes. Korean journal of Ichthyology, Vol. 33, No. 4, 205-216, (2021). https://doi.org/10.35399/ISK.33.4.1

Wang, Y., Yuan, H., Huang, J. et al. Inline index helped in cleaning up data contamination generated during library preparation and the subsequent steps. Mol Biol Rep (2021). https://doi.org/10.1007/s11033-021-06884-y

Huang, J. M., Yuan, H. and Li, C. H. (2021). Protocol for Cross-species Target-gene Enrichment. Bio-101: e1010606. DOI: 10.21769/BioProtoc.1010606.

Wenjun Chen, Xiaogu Wang, Xiangxing Gao, Xiaohui Gao, Chen Fang & Chenhong Li (2021) The complete mitogenome of the blackgill catshark, Parmaturus melanobranchus (Chan, 1966), Mitochondrial DNA Part B, 6:8, 2361-2362, DOI: 10.1080/23802359.2021.1951136

Sarker, A., Jiang, J., Naher, H., Huang J., Sarker K. K., Yin G. Baki M. A., Li C. Cross-species gene enrichment revealed a single population of Hilsa shad (Tenualosa ilisha) with low genetic variation in Bangladesh waters. Sci Rep 11, 11560 (2021). https://doi.org/10.1038/s41598-021-90864-6
2020

Adela Roa-Varón, Rebecca B Dikow, Giorgio Carnevale, Luke Tornabene, Carole C Baldwin, Chenhong Li, Eric J Hilton, Confronting Sources of Systematic Error to Resolve Historically Contentious Relationships: A Case Study Using Gadiform Fishes (Teleostei, Paracanthopterygii, Gadiformes), Systematic Biology, syaa095, https://doi.org/10.1093/sysbio/syaa095

Hughes, LC, Ortí, G, Saad, H, Chenhong Li, William T. White, Carole C. Baldwin, Keith A. Crandall, Dahiana Arcila, Ricardo Betancur‐R. Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics. Mol Ecol Resour. 2020; 00: 1– 18. https://doi.org/10.1111/1755-0998.13287

Galbreath KE, Toman HM, Li C, Hoberg EP. 2020 When parasites persist: tapeworms survive host extinction and reveal waves of dispersal across Beringia. Proc. R. Soc. B 287: 20201825. https://doi.org/10.1098/rspb.2020.1825

Alam, N., Cha-kraborty, S., Hossain, Md.M., Baki, M.A., Alam, S.M.I. and Li, C.H. (2020) Brachyuran Crab Fauna Character Estimated from Ma-rine Water of Bangladesh and Noted New Record (Crustacea: Decapoda) as Distribu-tion. Open Journal of Marine Science, 10, 218-232. https://doi.org/10.4236/ojms.2020.104017

XiaoYing Cao, JinLiang Zhao, ChenHong Li, ShuQin Zhu, YueYue Hao, YaMei Cheng, HongYan Wu, Morphological and skeletal comparison and ecological adaptability of Mandarin fish Siniperca chuatsi and big-eye Mandarin fish Siniperca kneri, Aquaculture and Fisheries, 2020, in press.

Bae, S.E., Kim, JK. & Li, C. A new perspective on biogeographic barrier in the flathead grey mullet (Pisces: Mugilidae) from the northwest Pacific. Genes Genom 42, 791–803 (2020). https://doi.org/10.1007/s13258-020-00942-8

Jubin Xing, Zhonghe Ke, Liping Liu, Chenhong Li, Xiaoling Gong, Baolong Bao, Eye location, cranial asymmetry, and swimming behavior of different variants of Solea senegalensis, Aquaculture and Fisheries, Volume 5, Issue 4, 2020, Pages 182-186

Qiaoyun Ai, Longlong Sang, Hongxin Tan, Xuxiong Huang, Baolong Bao, Chenhong Li, 2020. Genetic and morphological differences between yellowtail kingfish (Seriola lalandi) from the Bohai Sea, China and the Southern Ocean, Australia. Aquaculture and Fisheries. Available online 27 March 2020, In Press, https://doi.org/10.1016/j.aaf.2020.03.004

Sarker, A., Naher, H., Huang, J., Sarker, K. K., Baki, M. A. and Li, C., 2020 Genetic diversity of Hilsa kelee collected from the Bay of Bengal and the Arabian Sea. Mar. Biodivers 50, 94 (2020). https://doi.org/10.1007/s12526-020-01114-3

Li, D. and Li, C., 2020. Intelligent aquaculture. J World Aquacult Soc, 51: 808-814. doi:10.1111/jwas.12736

Liang Lu, Jinliang Zhao and and Chenhong Li, 2020. High-quality genome assembly and annotation of the big-eye mandarin fish (Siniperca knerii). G3: Genes|Genomes|Genetics Early Online, published on January 17, 2020 as doi:10.1534/g3.119.400930
2019

Fangyuan Cheng, Qian Wang, Pierpaolo Maisano Delser, and Chenhong Li, 2019. Multiple freshwater invasions of the tapertail anchovy (Clupeiformes: Engraulidae) of the Yangtze River. Ecology and Evolution, 2019;00:1–14.

Hao Yuan, Calder Atta, Luke Tornabene and Chenhong Li, 2019. Assexon: Assembling Exon Using Gene Capture Data. Evolutionary Bioinformatics, 15:1-13.

Guoxing Yin, Yiling Pan, Anirban Sarker, Mohammad A. Baki, Jin-Koo Kim, Hanlin Wu, Chenhong Li, 2019. Molecular systematics of Pampus (Perciformes: Stromateidae) based on thousands of nuclear loci using target-gene enrichment, Molecular Phylogenetics and Evolution, 140.

Jiamei Jiang, Hao Yuan, Xin Zheng, Qian Wang, Ting Kuang, Jingyan Li, Junning Liu, Shuli Song, Weicai Wang, Fangyuan Cheng, Hongjie Li, Junman Huang, Chenhong Li, 2019. Gene markers for exon capture and phylogenomics in rayfinned Fishes. Ecology and Evolution. 2019;1–11.

Robert S. Sommer, Michael Hofreiter, Frauke Kruger, Björn M. Siemers, Johanna L. A. Paijmans, Chenhong Li and Matthias F. Geiger, 2019. Preliminary results on the molecular study of fish-eating by ‘trawling Myotis’ bat species in Europe. Vertebrate Zoology, 69 (1): 83 – 92.

Yongtao Tang, Chenhong Li, Kunyuan Wanghe, Chenguang Feng, Chao Tong, Fei Tian, Kai Zhao, 2019. Convergent evolution misled taxonomy in schizothoracine fishes (Cypriniformes: Cyprinidae). Molecular Phylogenetics and Evolution, 134:323-337.
2018

Nicolas Straube, Chenhong Li, Matthias Mertzen, Hao Yuan and Timo Moritz, 2018. A phylogenomic approach to reconstruct interrelationships of main clupeocephalan lineages with a critical discussion of morphological apomorphies. BMC Evolutionary Biology, 18:158.

Kuang T, L Tornabene, J Li, J Jiang, P Chakrabartye, J S Spark, G J.P. Naylor, C Li, 2018. Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness. Molecular Phylogenetics and Evolution, 128, 192-202.

Liu S, Wang C, Li C, 2018. Progress in Aquaculture Genetics and Breeding in China. Journal of World Aquaculture Society, 49 (2): 272-276.

Xia J, Wu H, Li C, Wu Y, Liu S, 2018. A new species of Rhinogobius (Pisces: Gobiidae), with analyses of its DNA barcode. Zootaxa 4407 (4): 553-562.

L C. Hughes, G Ortí, Y Huang, Y Sun, C C. Baldwin, A W. Thompson, D Arcila, R Betancur-R, C Li, L Becker, N Bellora, X Zhao, X Li, M W, C Fang, B Xie, Z Zhou, H Huang, S Chen, B Venkatesh, and Q Shi, 2018. Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proceedings of the National Academy of Sciences of the United States of America, 115(24): 6249-6254. doi:10.1073/pnas.1719358115

H Li, Y. He, J. Jiang, Z. Liu, C. Li, 2018. Molecular systematics and phylogenetic analysis of the Asian endemic freshwater sleepers (Gobiiformes: Odontobutidae). Mol. Phylogenet. Evol., 121, 1–11.
2017

Liu J, Jiang J, Song S, Tornabene, L., Chabarria, R., Naylor, G. J. P., Li, C., 2017. Multilocus DNA barcoding - Species Identification with Multilocus Data. Sci. Rep. 7, 16601.

Song, S., Zhao, J., Li, C., 2017. Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. Mol. Phylogenet. Evol. 111, 44-55.

Corrigan, S., Maisano Delser, P., Eddy, C., Duffy, C., Yang, L., Li, C., Bazinet, A.L., Mona, S., Naylor, G.J., 2017. Historical introgression drives pervasive mitochondrial admixture between two species of pelagic sharks. Mol. Phylogenet. Evol. 110, 122-126.
2016

Wang, Q., Zhang, J., Matsumoto, H., Kim, J., Li, C. 2016. Population structure of elongate ilisha Ilisha elongata along the Northwestern Pacific Coast revealed by mitochondrial control region sequences. Fish Sci, 82 (5): 771 - 785.

PM Delser, Corrigan S., Hale M., Li C., Veuille M., Planes S., Naylor G., Mona S. 2016. Population genomics of C. melanopterus using target gene capture data: demographic inferences and conservation perspectives. Sci Rep. (6): 33753. doi: 10.1038/srep33753.

Yuan H, Jiang J, Jimenez FA, Hoberg EP,Cook JA, Galbreath KE, Li C. 2016. Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms. Mol Ecol Resour, 16(5):1095-1106. doi: 10.1111/1755-0998.12532.
2015

Chenhong Li, Shannon Corrigan , Lei Yang , Nicolas Straube , Mark Harris , Michael Hofreiter , William T. White , Gavin Naylor, 2015. DNA Capture Reveals Trans Oceanic Gene Flow in Endangered River Sharks. Proceedings of the National Academy of Sciences of the United States of Americawww.pnas.org/cgi/doi/10.1073/pnas.1508735112.

Nicolas Straube, Chenhong Li, Julien M. Claes, Shannon Corrigan and Gavin J. P. Naylor, 2015. Molecular phylogeny of Squaliformes and first occurrence of bioluminescence in sharks. BMC: Evolutionary Biology, 15:162. DOI 10.1186/s12862-015-0446-6.
2014

Nicolas Straube, William T. White, Hsuan-Ching Ho, Elisabeth Rochel, Shannon Corrigan, Chenhong Li, Gavin J.P. Naylor, 2014. A DNA sequence-based identification checklist for Taiwanese chondrichthyans. Zootaxa, 12/2013; 3752(1): 256-278.

H Ma, C Ma, C Li, J Lu, X Zou, Y Gong, W Wang, W Chen, L Ma, L Xia. 2015. First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics. Scientific Reports, (5), 11524.

Nicolas Straube, Robin W. Leslie, Paul J. Clerkin, David A. Ebert, Elisabeth Rochel, Shannon Corrigan, Chenhong Li, Gavin J.P. Naylor, 2014. On the occurrence of the southern Lanternshark, Etmopterus granulosus, off south Africa, with comments on the validity of E. compagnoi. Deep Sea Research Part II Topical Studies in Oceanography. DOI: 10.1016/j.dsr2.2014.04.004
2013

X. Yao, C. Li, C. W. Dick, 2013. Exon-primed intron-crossing (EPIC) markers for evolutionary studies of Ficus and other taxa in the fig family (Moraceae).Applications in Plant Sciences 1 ( 10 ): 1300037.

P. R. Ströher, C. Li and M. R. Pie, 2013. Exon-primed intron-crossing (EPIC) makers as a tool for ant Phylogeography, Revista Brasileira de Entomologia, AHEAD.

Li, C., M., Hofreiter, N., Straube, S., Corrigan, G. J. P. Naylor, 2013. Capturing protein-coding genes across highly divergent species. BioTechniques 54:321-326.

Betancur-R. R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton II JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G., 2013. The Tree of Life and a New Classification of Bony Fishes. PLOS Currents Tree of Life. 2013 Apr 18.

Broughton RE, Betancur-R. R, Li C, Arratia G, Ortí G. Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. PLOS Currents Tree of Life. 2013 Apr 16.

Betancur-R., R., C. Li, T. A Munroe, J. A. Ballesteros, G. Ortí. 2013. Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes). Systematic Biology 62 (5): 763-785.
2012

Li, C., Riethoven, J.-J. M., Naylor, G. 2012. EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies. Molecular Ecology Resources, 12(5):967-71.

Li, C., Matthes, K., Garcia, M., Naylor, G. J. P. 2012. Nuclear markers for phylogenetics of chondrichthyes and the problem in rooting phylogeny with distant outgroup. Molecular Phylogenetics and Evolution, 63:365-373.
2011

Sommer, J. A., Li, C., Brozek, J., Bessert, M. L., Ortí, G., Berra, T. M., 2011. Low genetic diversity in Nurseryfish, Kurtus gulliveri (Perciformes: Kurtidae), and an appraisal of its breeding system using microsatellite loci. The Beagle, Records of the Museums and Art Galleries of the Northern Territory, 2011 27: 179-188.

Li, C., Betancur-R, R., Smith, Wm. L., Ortí, G. 2011. Monophyly and interrelationships of Snook and Barramundi (Centropomidae sensu Greenwood) and five new markers for fish phylogenetics. Molecular Phylogenetics and Evolution, 60: 463-471.
2010

Li, C., Ortí, G., Zhao, J., 2010. The phylogenetic placement of sinipercid fishes (“Perciformes”) revealed by 11 nuclear loci. Molecular Phylogenetics and Evolution, 56: 1096-1104.

Li, C., Riethoven, J.-J. M., Ma, L., 2010. Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes. BMC: Evolutionary Biology, 10: 90.
2009

Li, C., Bessert, M. L., Macrander, J., Ortí, G., 2009. Low variation but strong population structure in mitochondrial control region of the plains topminnow, Fundulus sciadicus. Journal of Fish Biology, 74: 1037-1048.
2008

Li, C., Lu, G., Ortí, G., 2008. Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Systematic Biology, 57(4): 519-539.

Wang, C., Li, C., Li, S., 2008. Mitochondrial DNA-inferred population structure and demographic history of the mitten crab (Eriocheir, sensu stricto) along the coast of mainland China inferred from mitochondrial loci. Molecular Ecology, 17: 3515-3527.

Zhao, J., Li, C., Zhao, L., Wang, W., Cao, Y., 2008. Mitochondrial diversity and phylogeography of the Chinese perch, Siniperca chuatsi (Perciformes: Sinipercidae). Molecular Phylogenetics and Evolution, 49(1): 399-404.
2007

Li, C., Ortí, G., Zhang, G., Lu, G., 2007. A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC: Evolutionary Biology, 7: 44.

Li, C., Ortí, G., 2007. Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences, Molecular Phylogenetics and Evolution 44: 386-398.

Li, C., Bessert, M. L., Macrander, J., Ortí, G., 2007. Microsatellite loci for the plains topminnow (Fundulus sciadicus, Fundulidae). Molecular Ecology Notes 7: 691-693.
2003

Li, C., Li, S., 2003. Genetically improved farmed nile tilapia and its new selected generation in China. In: Proceedings of the Third World Fisheries Congress: Feeding the World with Fish in the Next Millennium--The Balance between Production and Environment. American Fisheries Society Symposium 38.
2002

Li, S., Li, C., Dey, M., Gagalacb, F., Dunham, R., 2002. Cold tolerance of three strains of Nile tilapia, Oreochromis niloticus, in China. Aquaculture 213: 123-129.
2001

Li, C., Li, S., Xing, Y., Hu, B., Zhao, S., Wu, Z., 2001. Evaluation of culture performances of two crab Eriocheir sinensis populations in China. World Aquaculture Magazine, 32(3): 15-16, 68-69.
1999

Li, S., Li, C., Dey, M., Dunham, R., 1999. Seinability of four strains of Nile tilapia, Oreochromis niloticus, in Chinese ponds. Aquaculture, 174: 223-227.