Workshop2025

DATE	DAY	TIME	PRESENTER	TOPIC
6 Jan	Mon	8:30a-9:15a	Chenhong Li	Phylogenomcis & EvolMarkers
		9:30a-10:15a	Chenhong Li	Library prep and sequencing
		10:30a-11:15a	Junlong Jiang	Linux
		1:30p-2:15p	Junlong Jiang	How to use BLACK
		2:30p-3:15p	Yiqin Fan	Assemble gene capture & resequencing data(Assexon pipeline)
		3:30p-4:15p	Haifeng Xu	Extracting mt-genome and annotation (Novoplasty+MitoFinder)
7 Jan	Tue	8:30a-9:15a	Jash	Data filtering & tree reconstruction (RAxML & IQTREE + ASTRAL)
		9:30a-10:15a	Jiantao Hu	Fossil calibration (r8s + MCMCtree & Beast)
		10:30a-11:15a	Ruyi Huang	Biogeography (BioGEOBEARS + RASP)
		1:30p-2:15p	Jiantao Hu	Phylogenetic networks & PhyloNetwork (Phylonetworks)
		2:30p-3:15p	Yuan Yao	Ploting
		3:30p-4:15p	Tianqin Wu	Assemble T2T Genome (hifiasm, 3D-DNA)
8 Jan	Wed	8:30a-9:15a	Liang Lu	Comparative genomics
		9:30a-10:15a	Liang Lu	Annotation and QC for genome assembly (BUSCO)
		10:30a-11:15a	Kishor	Gene family (CAFE)&Positive selection (PAML)
		1:30p-2:15p	Kishor	Population history (PSMC & SMC++)
		2:30p-3:15p	Kishor	Transcriptom analysis (Trinity)
		3:30p-4:15p	Rashed	Calling SNPs & filtering (GATK) Fst, Fdist, Genome-wide statistics scan (Stack)
9 Jan	Thur	8:30a-9:15a	Hui Wang	Database clean Library types & read parsing
		9:30a-10:15a	Hui Wang	Assembling ASV to OTU
		10:30a-11:15a	Jiantao Hu	Gene flow (TreeMix)
		1:30p-2:15p	Jinhang Zhang	Spatial transcriptomics
10 Jan	Fri	8:30a-9:15a	Liang Lu	Sweep selection (SweeD)
		9:30a-10:15a	Jiantao Hu & Tianqin Wu	Population structure (Admixture) & PCA (Plink, ggplot2)
		10:30a-11:15a	Jiantao Hu & Tianqin Wu	FSF (Arlequin) & Demography history (Fastsimcoal2)

Workshop2025

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