Liang Lu

Contact Information

College of Fisheries and Life Science
Shanghai Ocean University
999 Hucheng Huan Road, Pudong New District
Phone:+86 18621829252
email:llu@shou.edu.cn

Research

I am interested in comparative genomics and bioinformatics.
At present, our main focus is on the genomic evolution of fish, using whole genome data from multiple species and populations for comparative analysis, hoping to identify genomic differences between species during migration and freshwater invasion, and further explain the changes in different stages of species adaptive evolution. In addition, I am interested in assembling short-reads DNA data and have participated in the development of in silica assembly methods, which have improved the accuracy of short fragment assembly.

Education

Postdoctoral research, Shanghai Ocean University, Shanghai, China (2023.7-present)
Ph. D. student, Marine Biology, Shanghai Ocean University, Shanghai, China (2020.9-2023.6)
M. S., Marine Biology, Shanghai Ocean University, Shanghai, China (2017.9-2020.6)
B. S., BioScience, Shihezi University, Shihezi, China (2012.9-2016.6)

Publications

  1. Liang Lu, Junlong Jiang, Jinliang Zhao, Chenhong Li, Comparative genomics revealed drastic gene difference in two small Chinese perches, Siniperca undulata and S. obscura, G3 Genes|Genomes|Genetics, 2023;, jkad101, https://doi.org/10.1093/g3journal/jkad101

  2. Zhou T, Lu L, Li C. Optimization of the "in-silico" mate-pair method improves contiguity and accuracy of genome assembly. Ecol Evol. 2023 Jan 11;13(1):e9745. doi: 10.1002/ece3.9745.

  3. Wang L, Lu L, Sarker KK, Li C. A high-quality genome assembly of the Laotian shad (Tenualosa thibaudeaui), an endemic species of the Mekong River Basin. J Hered. 2022 Oct 12:esac058. doi: 10.1093/jhered/esac058.

  4. Sarker KK, Lu L, Huang J, Zhou T, Wang L, Hu Y, Jiang L, Naher H, Baki MA, Sarker A, Li C. First report of de novo assembly and annotation from brain and blood transcriptome of an anadromous shad, Alosa sapidissima. BMC Genom Data. 2022 Mar 28;23(1):22. doi: 10.1186/s12863-022-01043-z.

  5. Yun Hu, Liang Lu, Tao Zhou, Kishor Kumar Sarker, Junman Huang, Jianhong Xia, Chenhong Li, A high-resolution genome of an euryhaline and eurythermal rhinogoby (Rhinogobius similis Gill 1895), G3 Genes|Genomes|Genetics, 2021;, jkab395, https://doi.org/10.1093/g3journal/jkab395

  6. Liang Lu, Jinliang Zhao, Chenhong Li, High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (Siniperca knerii), G3 Genes|Genomes|Genetics, Volume 10, Issue 3, 1 March 2020, Pages 877–880, https://doi.org/10.1534/g3.119.400930